Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttgttgttacttctatagatctcaaagttggaactgtcataattatcacacagattcataatggctggctcattattttaatatatattctagATCAAAGGACTTGAAGATGAACTGGAGAGAAGAACTTTGACCTATACCTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGA

Basic information

species Zea mays
transcript GRMZM2G152057_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 3'ss of exon 9
gtaagctttgttgttacttctatagatctcaaagttgga------actgtcataattatcacacagattcataatggctggctcattattttaatatatattctagATCAAAGGACTTGAAGATGAACTGGAGAGAAGAACTTTGACCTATACCTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGA
|||||  ||||| ||  |  ||| ||| |  |   || |      | |   ||  |  |||||   ||||||||||  |  | |||| ||||||  |    | |||||||| |||| |||| |||||||||| |||||||||||||| ||||| || |||||||| || ||| |||| ||||||||||||||||||||||| ||||
gtaaggcttgttattgttgatattgatttgcagactgcaggacataatcgtatgttcttcacaacaattcataatgttt--cccattcttttaactt----tgtagATCAATGGACATGAAAATGAACTGGAAAGAAGAACTTTGACATATACATCATGGAACCAGTCCTCAGATCCTAAAGACAAAATGACTTGGCATCCAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67024768|gb|CO453517.1|CO453517
EST:     AGGAGCATGATTGTATTCCAGATGAACATTATGTGCAGACATTATTTTCT                         ATCAAAGGACTTGAAGATGAACTGGAGAAAAGAACTTTGACCTATACCTCG
genomic: AGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttg ... tatattctagATCAAAGGACTTGAAGATGAACTGGAGAGAAGAACTTTGACCTATACCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattatcacacagattcataatggctggctcattattttaatatatattctagATCAAAGGACTTGAAGATGAACTGGAGAGAAGAACTTTGACCTATACCTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGA
                                     ttttaat  putative branch site (score: 3)
                               tcattattttaatata  TA-rich tract