Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G151934_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g16090.1 (Oryza sativa), 3'ss of exon 9
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatt---tagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
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-------------------------gagtagttgctttcagatcttacatccacagttccactgagtagcaggttggccaaatgaaatcattgactttgttcctttg--tgttctgattttctacagATACTTAGGAGGCCCAGAATTGGTGCAAATCGGTTACTAGATATGAAAACCCAACCGCAAAAGCTAACTAGGAGATGCGAAGTCACTGCAATTCTTGTAT
upper sequence: GRMZM2G151934_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA14G07060.1 (Glycine max), 3'ss of exon 8
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcat-tatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
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---------------------------gtatgatattaaaactgtttactttttgtttgattagaatgtggtaatgaa--attcagataaattcactactctttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTC
upper sequence: GRMZM2G151934_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA02G41920.1 (Glycine max), 3'ss of exon 7
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcat-tatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
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----------------gtatgatattaaaattgg---ttactttttgtttgattagaatgtggtaatgaaattaccactgtttcagataaattc-actacttt-atgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211443684|gb|FL398437.1|FL398437EST: GTGTCTGTCGGAGGAACAGACTGTGAGCAGT ATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACT
genomic: GTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaa ... atttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
ttttgac putative branch site (score: 3)
ttcattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG