1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgcaaaatttatttatcacgttattcaatgatacataacttaaaacgaaaatacctttactgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGCTCCAGTACTCACCAAATCTAAGATGCACTGCT
species | Zea mays |
transcript | GRMZM2G151916_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|32908149|gb|CF012962.1|CF012962
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACTGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|31363416|gb|CD447773.1|CD447773
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACTGAGTTCAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|60398307|gb|DN231123.1|DN231123
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|60398739|gb|DN231555.1|DN231555
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|211015494|gb|FL335940.1|FL335940
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACTGAGTTCAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|211033507|gb|FL333369.1|FL333369
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|91875587|gb|EB405544.1|EB405544
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|60349644|gb|DN216617.1|DN216617
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: GATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|60400988|gb|DN233795.1|DN233795
genomic: GATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ATCAAAGCTCACCCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|78545004|gb|DV622502.1|DV622502
genomic: ATCAAAGCTCA-CCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: TACACTGAGTTCAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|211420812|gb|FL269789.1|FL269789
genomic: TACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGEST: gi|211159258|gb|FL355922.1|FL355922
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgcaaaa ... actgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTG
tatcacgttattcaatgatacataacttaaaacgaaaatacctttactgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGCTCCAGTACTCACCAAATCTAAGATGCACTGCT
acataac putative branch site (score: 330)
cctttact putative PPT
atacataacttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaaatttatttatcacgttattcaatgatacataacttaaaacgaaaatacctttactgttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGTTTGCTCCAGTACTCACCAAATCTAAGATGCACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG