Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactacatggcgcctgcgctttccgtacgaggctggcgaattgtatgatcactaactttctgtctgctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCCCCACTTGCAGCCAGTACCATGTATGGCTATCAAGGGCAGAGTCATCAGA

Basic information

species Zea mays
transcript GRMZM2G150484_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89757737|gb|DY687212.1|DY687212
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|13558515|gb|BG549871.1|BG549871
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGCTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|71774884|gb|DR972762.1|DR972762
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|76285335|gb|DV024903.1|DV024903
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|78023748|gb|DV492135.1|DV492135
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|31357140|gb|CD441497.1|CD441497
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|31356324|gb|CD440681.1|CD440681
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGG
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtacgaggctggcgaattgtatgatcactaactttctgtctgctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCCCCACTTGCAGCCAGTACCATGTATGGCTATCAAGGGCAGAGTCATCAGA
                            cactaac  putative branch site (score: 1)
                 aattgtat  TA-rich tract