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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgattcaagctgcatacagaaatgtgatatttgaatctgaatgtaggcagtttccaagccatccagcacataatatgtatctgtacttttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGAAGCGTTACTTCAACAGCGCATTTTCGGGATACGCCGTGGGTATGGCGGT

Basic information

species Zea mays
transcript GRMZM2G150251_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092200|gb|CF052194.1|CF052194
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|33093608|gb|CF053602.1|CF053602
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|78123104|gb|DV541488.1|DV541488
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|76282340|gb|DV021908.1|DV021908
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcagtttccaagccatccagcacataatatgtatctgtacttttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGAAGCGTTACTTCAACAGCGCATTTTCGGGATACGCCGTGGGTATGGCGGT
                                          cttttgctt  CT-rich tract
                          ataatatgtat  TA-rich tract