1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agttcacatgaactgctatcctgtatttacgaatcttgactagtctagtaatgtatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT
species | Zea mays |
transcript | GRMZM2G147671_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGNGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|89252647|gb|DY624433.1|DY624433
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|24767864|gb|CA403000.1|CA403000
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGCCAAGTCAGCCAAAACAGAAGACGAGAAGAACTGAEST: gi|9730888|gb|BE509640.1|BE509640
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACCAGAAGAACTGAEST: gi|60336789|gb|DN203762.1|DN203762
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|60401369|gb|DN234176.1|DN234176
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|211047090|gb|FL234542.1|FL234542
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|15053742|gb|BI359287.1|BI359287
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|12968898|gb|BG265739.1|BG265739
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: TTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|211047091|gb|FL234543.1|FL234543
genomic: TTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAAAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|32937218|gb|CF042037.1|CF042037
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCGGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|15053743|gb|BI359288.1|BI359288
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|32937848|gb|CF042667.1|CF042667
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCCCCTGTTAAAGATTTGCTGGCATCATTGCCCAGCCAGGGAGAG CAAGAGAAGAAGGAAGTCAAGTCAGTCAAAACAGAAGACGAGAAGAACTGAEST: gi|60359212|gb|DN226185.1|DN226185
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|4388150|gb|AI491322.1|AI491322
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|22542686|gb|BU093124.1|BU093124
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|28984428|gb|BQ539033.2|BQ539033
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|9733091|gb|BE511843.1|BE511843
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: GATCCATCTGTTAAAGATTTGCTGGCATCNATTGCACAGCNCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGEST: gi|76910327|gb|DV163809.1|DV163809
genomic: GATCCATCTGTTAAAGATTTGCTGGCATC-ATTGCACAGC-CAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTG
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|5846870|gb|AI999953.1|AI999953
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|60400076|gb|DN232883.1|DN232883
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|211525286|gb|FK977009.1|FK977009
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|37384426|gb|CF629283.1|CF629283
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|78021348|gb|DV489735.1|DV489735
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|211132437|gb|FL443441.1|FL443441
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|33095782|gb|CF055776.1|CF055776
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAGCTGAEST: gi|60352219|gb|DN219192.1|DN219192
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|5770174|gb|AI973348.1|AI973348
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|211525285|gb|FK977008.1|FK977008
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: GGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|37382952|gb|CF628448.1|CF628448
genomic: GGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|60395593|gb|DN228463.1|DN228463
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|5124319|gb|AI746055.1|AI746055
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|15053278|gb|BI358823.1|BI358823
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|9733092|gb|BE511844.1|BE511844
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|166613681|gb|EG279092.1|EG279092
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: TCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|60354976|gb|DN221949.1|DN221949
genomic: TCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|78026924|gb|DV495311.1|DV495311
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|4609687|gb|AI600526.1|AI600526
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGAEST: gi|4804535|gb|AI665407.2|AI665407
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
tagtaatgtatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT
tttctttatttctctt CT-rich tract
tttctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttcacatgaactgctatcctgtatttacgaatcttgactagtctagtaatgtatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC