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...gctgagaaaccaccgtggtaacttttgtgagcattagtttcatatctagtcagaaagtgtcaaacagtgtgttgaatcaaatgataatgttttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTGTTACTGATAATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTG
species | Zea mays |
transcript | GRMZM2G147500_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|31405728|gb|CD484460.1|CD484460
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: TGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|60342233|gb|DN209206.1|DN209206
genomic: TGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: GAGAATGCAGATTTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|60350197|gb|DN217170.1|DN217170
genomic: GAGAATGCAGA-TTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: GCTGATGCAAGAGAATGCAGA-TTACGGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|148964224|gb|EE015404.2|EE015404
genomic: GCTGATGCAAGAGAATGCAGATTTAC-GGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|148955451|gb|EC901042.2|EC901042
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: TGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
genomic: TGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
ctagtcagaaagtgtcaaacagtgtgttgaatcaaatgataatgttttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTGTTACTGATAATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTG
ttttacctc CT-rich tract
aaatgataatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgagaaaccaccgtggtaacttttgtgagcattagtttcatatctagtcagaaagtgtcaaacagtgtgttgaatcaaatgataatgttttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTGTTACTGATAATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC