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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattatactatgaattcataaaagcagaactttattgtggatttggtagcgttttttagtttctactttaaatatctataaatattctctcttcttgcagTGTCAAACATTGGTAGATGAATTGTCAGCTTCACATTCGACGGACTTGCAGCAACGGGCATACGAGCTACAGGCTTTACTAGGCTTGGACAAAACTGCTG

Basic information

species Zea mays
transcript GRMZM2G146697_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 9
-aatta--tactatgaattcataaaagcagaactttattgtggatttggtagcgttttttagtttctactttaaatatctataaatattctct--cttcttgcagTGTCAAACATTGGTAGATGAATTGTCAGCTTCACATTCGACGGACTTGCAGCAACGGGCATACGAGCTACAGGCTTTACTAGGCTTGGACAAAACTGCTG
  |||   ||| ||||| |   ||||        ||  ||| || || || |   | | | |||| ||  | |||| | |||||||  ||||       |||||||| ||| | ||| ||||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||| ||||| |||||||||   ||||
ctattgcttaccatgaagtggcaaaactc---tcttcctgtagaattcgt-gtactctattgtttgtaggt-aaatctttataaatcatctccgatcctttgcagTGCCAATCGTTGATAGATGAATTGTCAGCTTCGCATTCAACAGACTTGCAGCAGCGTGCATATGAGCTACAGGCTTTGCTAGGTTTGGACAAACAGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9952284|gb|BE638867.1|BE638867
EST:     CATTTGCGTTTGAAATCACTCTTGGAAGAAAGATCGATTTGCTGCCTGAG                         TGTCAAACATTGGTAGATGAAT
genomic: CATTTGCGTTTGAAATCACTCTTGGAAGAAAGATCGATTTGCTGCCTGAGgtaaatgaac ... cttcttgcagTGTCAAACATTGGTAGATGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagcgttttttagtttctactttaaatatctataaatattctctcttcttgcagTGTCAAACATTGGTAGATGAATTGTCAGCTTCACATTCGACGGACTTGCAGCAACGGGCATACGAGCTACAGGCTTTACTAGGCTTGGACAAAACTGCTG
                                     tattctctcttcttgc  CT-rich tract
      ttttttagtttctact  TA-rich tract