1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcattctcttatttgattaatttactattttcccctttgttttcggttatgtctgcttcttcacctctgtttactgattttataaatatatatctcttttttttcctgcccgtttcctcgaaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG
species | Zea mays |
transcript | GRMZM2G143462_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTEST: gi|71764240|gb|DR962177.1|DR962177
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTEST: gi|9731839|gb|BE510591.1|BE510591
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCACGCCATTAGTGTEST: gi|71771538|gb|DR969475.1|DR969475
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTEST: gi|78111155|gb|DV529552.1|DV529552
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
gattttataaatatatatctcttttttttcctgcccgtttcctcgaaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG
tactgat putative branch site (score: 2)
tctcttttttttcctg putative PPT
tataaatatatatctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattctcttatttgattaatttactattttcccctttgttttcggttatgtctgcttcttcacctctgtttactgattttataaatatatatctcttttttttcctgcccgtttcctcgaaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG