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...tagatattgggtaggcacgaatcattttgcagcaactgatctgaatgcacatatttcagcttttgtactgatcctgtttttatctgtgttctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTCGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGATACAGGT
species | Zea mays |
transcript | GRMZM2G142984_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTTGAAATMCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|17921527|gb|BM259178.1|BM259178
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|166530774|gb|EG240201.1|EG240201
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: TAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|149107225|gb|EE189109.2|EE189109
genomic: TAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|32859979|gb|CD999660.1|CD999660
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|16926376|gb|BM079444.1|BM079444
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|5070005|gb|AI737970.1|AI737970
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|211383190|gb|FL437263.1|FL437263
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|67015787|gb|CO444536.1|CO444536
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|91867738|gb|EB399776.1|EB399776
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|17921853|gb|BM259489.1|BM259489
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|60344970|gb|DN211943.1|DN211943
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|116819630|gb|EC862778.1|EC862778
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCATACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|113837431|gb|DW959769.1|DW959769
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: CTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|91052774|gb|EB163192.1|EB163192
genomic: CTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGG GTGTTCATCTTTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|37392421|gb|CF633460.1|CF633460
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|111189956|gb|EE288092.1|EE288092
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|16918764|gb|BM073885.1|BM073885
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|87298726|gb|DY470729.1|DY470729
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|110531048|gb|EE035232.1|EE035232
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGCCAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTEST: gi|74035099|gb|DT535589.1|DT535589
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
EST: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
genomic: GGTTGAAATACATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcc ... ctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTT
tgcacatatttcagcttttgtactgatcctgtttttatctgtgttctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTCGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGATACAGGT
ttctaaa putative branch site (score: 567)
tgtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatattgggtaggcacgaatcattttgcagcaactgatctgaatgcacatatttcagcttttgtactgatcctgtttttatctgtgttctaaatgtagGTGTTCATCATTGGACCAGAGAAGGAGGTCAGGAAAGCTGAGGCCATCTTTCGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGATACAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - ttgcagc
- - - - - - - - - - - - - - - - - - - - -tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtactg