1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcaggtacccttgccatatccatcaaatttcggactgtcctacttttttgtgttaaaaatgtcagttccaacatacccatgcttgaagatttaatgtttcagGTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGGACTGCAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTC
species | Zea mays |
transcript | GRMZM2G141873_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAGEST: gi|149011848|gb|EE042455.2|EE042455
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt
EST: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTG GTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGEST: gi|71423226|gb|DR805987.1|DR805987
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGgcaggtaccc ... aatgtttcagGTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTG
EST: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAGEST: gi|78087078|gb|DV515471.1|DV515471
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt
EST: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt
ttgtgttaaaaatgtcagttccaacatacccatgcttgaagatttaatgtttcagGTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGGACTGCAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTC
atttaat putative branch site (score: 4)
aagatttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggtacccttgccatatccatcaaatttcggactgtcctacttttttgtgttaaaaatgtcagttccaacatacccatgcttgaagatttaatgtttcagGTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTGGACTGCAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG