1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcctttctacacaattcaatcccctccacattccaagactgtgttagctgcaacttgaactcgccagcaattgctgcatgcagccctgacataacgtactttggatctttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAGGGAGGCCATCAGAGCCGCCAGGAAGGAATTCTCGGTCTGCACTGGTCC
species | Zea mays |
transcript | GRMZM2G141473_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5361195|gb|AI795615.1|AI795615
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|17921843|gb|BM259479.1|BM259479
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|37387457|gb|CF630922.1|CF630922
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|17921516|gb|BM259167.1|BM259167
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|88758370|gb|DY542739.1|DY542739
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5005980|gb|AI712042.1|AI712042
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5871449|gb|AW017920.1|AW017920
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5296129|gb|AI783004.1|AI783004
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5791471|gb|AI978263.1|AI978263
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: AGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTTTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|16925609|gb|BM078677.1|BM078677
genomic: AGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|47962486|gb|CN845195.1|CN845195
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|40335773|gb|CK369843.1|CK369843
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|17921574|gb|BM259225.1|BM259225
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAEST: gi|5895925|gb|AW037171.1|AW037171
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTEST: gi|16927116|gb|BM080185.1|BM080185
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCT
EST: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAG CATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
genomic: TGAGCTGATCAACAGCGCCCGTGACCAGAAGCGTGTCCTCTCTTCCAAAGgtgagccttt ... ttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGA
ccagcaattgctgcatgcagccctgacataacgtactttggatctttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAGGGAGGCCATCAGAGCCGCCAGGAAGGAATTCTCGGTCTGCACTGGTCC
acataac putative branch site (score: 42)
tctttgttt putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcctttctacacaattcaatcccctccacattccaagactgtgttagctgcaacttgaactcgccagcaattgctgcatgcagccctgacataacgtactttggatctttgtttgcagCATCCGGCGAGCCTCCGCTTCTTCTAGCTGCCTCGGTGCACTGCGCAATGAGGGAGGCCATCAGAGCCGCCAGGAAGGAATTCTCGGTCTGCACTGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA