1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacaaagttcagtgtggtatttgctttagaagggggacaaaatgccatcgtaattcatttacagggtatgtcctaaatgctcaccctccttttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATTGGACTGGGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCAC
species | Zea mays |
transcript | GRMZM2G140726_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGACACACAATG TCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATTEST: gi|76920828|gb|DV168329.1|DV168329
genomic: GTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGACACACAATGgtattgtttc ... tttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATT
EST: GTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGACACACAATG TCCAACAGGGAGTTGCCATCTCGAAAAATTATAACTCCTEST: gi|33092164|gb|CF052158.1|CF052158
genomic: GTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGACACACAATGgtattgtttc ... tttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCT
EST: GTGTATTGAGAAACACGCCATCTTCTCCAGCAGATGGCAGACACACAATG TCCAACAGGGAGTTGCCATCTCGGAAGATTATAACTCCTCTGAAGGATATTEST: gi|74235692|gb|DT643606.1|DT643606
genomic: GTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGACACACAATGgtattgtttc ... tttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATT
EST: AGCAGATGGCAGACACACAATG TCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATT
genomic: AGCAGATGGCAGACACACAATGgtattgtttc ... tttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATT
catcgtaattcatttacagggtatgtcctaaatgctcaccctccttttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATTGGACTGGGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCAC
tgctcac putative branch site (score: 81)
ctcaccctccttttgt CT-rich tract
taattcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaagttcagtgtggtatttgctttagaagggggacaaaatgccatcgtaattcatttacagggtatgtcctaaatgctcaccctccttttgttgcagTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATTGGACTGGGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCAC
- - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - aatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattt