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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgccccttgtcctaacacaccttgggtgtataccttttcaagtttacaagtagattacgcctgcaacatatagtttctcacatggaatttgtatgagatgcccacagGTCCATGGGGCATTTGCTGGTTTCAGCGGCATCACTTCTTGCATCTGCAACACGCACTACGTGTACCTTCCCATCACGGAGGTCATCACAGCACCGAAGC

Basic information

species Zea mays
transcript GRMZM2G139360_T06
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139360_T06 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 12
gtaagttgccccttgtcctaacacaccttgggtgtataccttttcaagt--------ttacaagtag-attac-gcctgcaacatatagtttctcacatggaatttgtatga-gatgcccacagGTCCATGGGGCATTTGCTGGTTTCAGCGGCATCACTTCTTGCATCTGCAACACGCACTACGTGTACCTTCCCATCACGGAGGTCATCACAGCACCGAAGC
|||||| ||  |  |      ||  |||  |   | || ||||  ||||         || | |||| ||| | |||     ||||| |||  | | ||| ||  || |||| | ||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |||| ||||||||
gtaagtcgcttcaggcat--gcaggcctctgacatctatctttcgaagtgtggaggactagaggtagcattgctgcccatgtcatatggttggttaaatgaaaactgcatgatggtgcctgcagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACTTCTTGCATCTGCAACACGCACTACGTCTACCTCCCCATCACAGAAGTCATAACAGTACCGAAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattacgcctgcaacatatagtttctcacatggaatttgtatgagatgcccacagGTCCATGGGGCATTTGCTGGTTTCAGCGGCATCACTTCTTGCATCTGCAACACGCACTACGTGTACCTTCCCATCACGGAGGTCATCACAGCACCGAAGC
                      ttctcac  putative branch site (score: 2)
               atatagttt  TA-rich tract