1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgattttcttacggtatccatatgaccatatctctactgttttgctgccttcttttgcaccatgacatattgaggcatagcatctgcatcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG
species | Zea mays |
transcript | GRMZM2G138676_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATEST: gi|31355062|gb|CD439419.1|CD439419
genomic: CGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
EST: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATEST: gi|38229772|gb|CF920085.1|CF920085
genomic: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
EST: GTGGAGTCGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTACEST: gi|71322556|gb|DR797955.1|DR797955
genomic: GTGGAGTCGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
EST: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATEST: gi|71312506|gb|DR792786.1|DR792786
genomic: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
EST: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATEST: gi|76292960|gb|DV032528.1|DV032528
genomic: CTCTGTTTCCTGGAGAAAGTGGAGTCGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
EST: CGACCAACTAGTTGAGATCATCAAG GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
genomic: CGACCAACTAGTTGAGATCATCAAGgtgattttct ... catcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTAT
ttgctgccttcttttgcaccatgacatattgaggcatagcatctgcatcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttcttacggtatccatatgaccatatctctactgttttgctgccttcttttgcaccatgacatattgaggcatagcatctgcatcttgcagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA