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...ctgctttgttcgcagaaagaagtttctcttttctcgaacatgaaagcagacagagtagtagtggatacgtgatttgatatttgagaatttgtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCAACATGGCAAAGCAGAGCAGTGGCAAGGCGAGTACCTCAACGCAGAGGG
species | Zea mays |
transcript | GRMZM2G138511_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|32836644|gb|CD976322.1|CD976322
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|33102124|gb|CF062084.1|CF062084
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|60345046|gb|DN212019.1|DN212019
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|101385815|gb|EB814956.1|EB814956
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|32837356|gb|CD977034.1|CD977034
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCTCAAGGCAACCTTCCATGTCAATGCCEST: gi|67020498|gb|CO449247.1|CO449247
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|211314726|gb|FL246031.1|FL246031
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCEST: gi|120481228|gb|EH211231.1|EH211231
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
EST: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAG GGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
genomic: TTTGCGCAGAAAGCTACATATTTGATGTCACTGAGTGGTTCAACTGTCAGgtgattcaga ... gtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCC
gcagacagagtagtagtggatacgtgatttgatatttgagaatttgtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCAACATGGCAAAGCAGAGCAGTGGCAAGGCGAGTACCTCAACGCAGAGGG
atttgat putative branch site (score: 140)
tttgtttttcc putative PPT
atatttgagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctttgttcgcagaaagaagtttctcttttctcgaacatgaaagcagacagagtagtagtggatacgtgatttgatatttgagaatttgtttttccagGGAATGAGATGCCCGGCGAACACTCACAAGGCAACCTTCCATGTCAATGCCAACATGGCAAAGCAGAGCAGTGGCAAGGCGAGTACCTCAACGCAGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
ctgcttt
- - - - - - - gaaagaag
- - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - -gcagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg