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gtatggcatgatgaaaacgataaaaaaaactagcaggtgttgaacctgcttcttgcattaaaaaccaaaggtttagtgatatacttaatattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCA
species | Zea mays |
transcript | GRMZM2G135283_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|40336482|gb|CK370552.1|CK370552
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: AAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|37393418|gb|CF633973.1|CF633973
genomic: AAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: AAGAAAT-AAT-AACAAGGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTEST: gi|60397906|gb|DN230722.1|DN230722
genomic: AAGAAATAAATAAACAA-GGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCT
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|14204327|gb|BG838004.1|BG838004
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|60351519|gb|DN218492.1|DN218492
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|60346600|gb|DN213573.1|DN213573
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAC GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|67024112|gb|CO452861.1|CO452861
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGEST: gi|60349820|gb|DN216793.1|DN216793
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
EST: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAG GTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
genomic: TGATCTTTTACAGGAAGGGAGTCAAAGAAATAAATAAACAAGGAAAAGAGgtatggcatg ... tattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTG
acctgcttcttgcattaaaaaccaaaggtttagtgatatacttaatattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCA
acttaat putative branch site (score: 4)
tttagtgatatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcatgatgaaaacgataaaaaaaactagcaggtgttgaacctgcttcttgcattaaaaaccaaaggtttagtgatatacttaatattctatagGTTATGTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT