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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctgaacttctcgtaaccaactaaggtgacttgtttcgtattttccacctgtcccaaaacgttgagagatctgccgttttccatgcccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG

Basic information

species Zea mays
transcript GRMZM2G133959_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133959_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g72870.1 (Oryza sativa), 3'ss of exon 11
gtgagttctgaacttctcgtaaccaactaaggtgacttgtttcgtattttccacctgtcccaaaacgt-tgagagatctgccgttttccatgcccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
||||||||||| |||| |  | || ||||||  ||  ||| |  ||| || |  || ||  |||| || ||||| ||    | |||           |||||||| | || ||||| ||||| || |||||||||||||||||||||   |||
gtgagttctgagcttcac-catcccactaaga-gagatgtcttatatgtttctactatctgaaaatgtctgagacattactcctttatggcaaattgtgcagTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445212|gb|DR826262.1|DR826262
EST:     CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGG                         TACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
genomic: CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGGgtgagttctg ... cccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
EST: gi|211416883|gb|FL440253.1|FL440253
EST:     CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGG                         TACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
genomic: CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGGgtgagttctg ... cccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
EST: gi|78080386|gb|DV508798.1|DV508798
EST:     CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGG                         TACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
genomic: CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGGgtgagttctg ... cccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
EST: gi|76290046|gb|DV029614.1|DV029614
EST:     CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGG                         TACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
genomic: CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGGgtgagttctg ... cccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
EST: gi|71431548|gb|DR812598.1|DR812598
EST:     CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGG                         TACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG
genomic: CTTCATGGTCTGTAACAGCTGTTGATGCTGCATGCAGCCATCTCTTAAGGgtgagttctg ... cccattgcagTACAACACAATGCGCAATGTCCTTTTCATGGCAATGACAGAGTTCCAAAAG