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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtaagatgtatgtctgcaaggtacatggatcgttatgttagtgtacttctcttctcaaccgagcatgcctaactgcctgattacctttttccgtttagGTTGGAAACAGCGGGGCAGCTGGATCTGAGTCAACGTCTGCCATGATGCAGAGGTTCTGGGATTCAGCAATGTCCATTGGACCTCTTGATGATGATGATG

Basic information

species Zea mays
transcript GRMZM2G133621_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133621_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 3'ss of exon 9
------------------------------------------------------------------------------------------tagtaagatgtatgtctgcaaggt-acatggatcgttatgttagtgtacttctcttctcaaccgagcatgcctaactgcctgattacctttttccgtttagGTTGGAAACAGCGGGGCAGCTGGATCTGAGTCAACGTCTGCCATGATGCAGAGGTTCTGGGATTCAGCAATGTCCATTGGACCTCTTGATGATGATGATG
                                                                                          ||  | | ||   |  ||||     |  |||| | |    ||| |  |  ||| ||     |     ||     |  |  ||| || | |  |   |  ||||||||||||||| || | ||||||||||| | || || || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
gtaagtgaaaagttccagctgcttgatatattttctctgtgtccttgtgcatacagtcttacacaatactcactttgtcagcatgcattgtaaaatgctgagagaatgcatcacgatgtggaacctgtcattattacatgtcttttgctttcattctat-taagatggattgagtatcatgctgtatgcagGTTGGAAACAGCGCGGGATCTGGATCTGAGGCGACATCAGCTATGATGCAGAGATTTTGGGATTCAGCAATGTCCATTGGACCTCTTGATGATGATGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71426714|gb|DR807764.1|DR807764
EST:     ATGCTGCAATTGCTACG                         GTTGGAAACAGGGGGGCAGCTGGATCTGAGTCAACGTCTGCCATGATGCAG
genomic: ATGCTGCAATTGCTACGgtgagcgtca ... ttccgtttagGTTGGAAACAGCGGGGCAGCTGGATCTGAGTCAACGTCTGCCATGATGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttctcttctcaaccgagcatgcctaactgcctgattacctttttccgtttagGTTGGAAACAGCGGGGCAGCTGGATCTGAGTCAACGTCTGCCATGATGCAGAGGTTCTGGGATTCAGCAATGTCCATTGGACCTCTTGATGATGATGATG
                                     ttacctttttccgttt  CT-rich tract
                                          ttttt  TA-rich tract