1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactggactactggctgaacctagtgcctttctcaatatctgtaacaatattcacacggccatttcgaattcctaagtttaatttgttctttgtcctttcccggtgccactctacagTATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTTATAGCTGCCGTAGACCACGCAAGACAAATCGGTTGGAAG
species | Zea mays |
transcript | GRMZM2G133621_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTTG TATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTTEST: gi|60359150|gb|DN226123.1|DN226123
genomic: TTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTTGgtactggact ... cactctacagTATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTT
EST: TTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTTG TATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTT
genomic: TTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTTGgtactggact ... cactctacagTATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTT
tttcgaattcctaagtttaatttgttctttgtcctttcccggtgccactctacagTATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTTATAGCTGCCGTAGACCACGCAAGACAAATCGGTTGGAAG
gtttaat putative branch site (score: 102)
ccactct putative PPT
taagtttaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggactactggctgaacctagtgcctttctcaatatctgtaacaatattcacacggccatttcgaattcctaagtttaatttgttctttgtcctttcccggtgccactctacagTATGAAGATGAGGACCATGATAAGGTCATATTGTCGTCGGACAGTGACCTTATAGCTGCCGTAGACCACGCAAGACAAATCGGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG