1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttttgggtcttgtttctatgccacttatctttgtataatctcccagtgaatactgaacccaaagttttcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCTACTGCAAGATCAAAGGAAAGTAGACGCTGATGTCTAGTGGGATCAACT
species | Zea mays |
transcript | GRMZM2G133226_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT CTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCEST: gi|148933234|gb|EC876885.2|EC876885
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
EST: TCCCCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT TTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCEST: gi|166442891|gb|EG164741.1|EG164741
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
EST: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT CTTAATGTTATAGGACAGGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCEST: gi|149103657|gb|EE289061.2|EE289061
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
EST: TCCCCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT TTTAATGTTATAGGACAAGGACTAGGCTTTTTGGGCTTTGGATTGTATGCCEST: gi|148947033|gb|EC892330.2|EC892330
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
EST: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT CTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCEST: gi|91054598|gb|EB165016.1|EB165016
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
EST: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTT CTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
genomic: TCACCGTTGGAATTGGTTGGGTGCTATTTGGTGGACTTCCTTTTGATCTTgtaagttttg ... tcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCC
acttatctttgtataatctcccagtgaatactgaacccaaagttttcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCTACTGCAAGATCAAAGGAAAGTAGACGCTGATGTCTAGTGGGATCAACT
ttttcgt CT-rich tract
tttgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgggtcttgtttctatgccacttatctttgtataatctcccagtgaatactgaacccaaagttttcgtgtgcagCTTAATGTTATAGGACAAGGACTAGGCTTTCTGGGCTCTGGATTGTATGCCTACTGCAAGATCAAAGGAAAGTAGACGCTGATGTCTAGTGGGATCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT