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gttagcttactccatgcaaaacattcttgcttccttgtgttagaaaatatcattcagattttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAAGATAAGTGTAAAATCACGCTTGGACAACTTGCTGCAAAGAAACTCGTC
species | Zea mays |
transcript | GRMZM2G133121_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCATTCCAGTCACATCGGTCCATTGGTACGCAAAGCCAG AGATTCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAEST: gi|9461973|gb|BE453997.1|BE453997
genomic: ACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
EST: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAG AGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAEST: gi|211118591|gb|FL071331.1|FL071331
genomic: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
EST: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAG AGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAEST: gi|29167951|gb|CB411211.1|CB411211
genomic: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
EST: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAG AGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAEST: gi|211118592|gb|FL071332.1|FL071332
genomic: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
EST: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAG AGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAEST: gi|9566322|gb|BE475831.1|BE475831
genomic: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
EST: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAG AGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
genomic: TAGGGCACTAACCATTCCAGGCACATCGGTCCATTGGTACGCAAAGCCAGgttagcttac ... ttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTA
gcaaaacattcttgcttccttgtgttagaaaatatcattcagattttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAAGATAAGTGTAAAATCACGCTTGGACAACTTGCTGCAAAGAAACTCGTC
ttttttttcc CT-rich tract
ttagaaaatatcattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttactccatgcaaaacattcttgcttccttgtgttagaaaatatcattcagattttttttccagAGATGCGGAAGCAAAGGAAGATGGGTCATATTACAATTGTGGGGCCTTCTAAGATAAGTGTAAAATCACGCTTGGACAACTTGCTGCAAAGAAACTCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA