1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactaagatcttcattccaaatgaatttattctgtttaaaaaatatatacttcaagtataaatgtctttgtctcgttgtgccgcctgacacttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCGGTGCTCTTTGTAATGAACACAATGTGGTTCATGAAGATCTTAAAAGGCG
species | Zea mays |
transcript | GRMZM2G132084_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG ATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCGEST: gi|211111684|gb|FL466622.1|FL466622
genomic: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
EST: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG ATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCGEST: gi|166657559|gb|EG291616.1|EG291616
genomic: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
EST: TTTATTTGCATTACAGTCAG ATAATGCAGATGCATAGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATC
genomic: TTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCAT-GCCTTTGGGTACTACCTGACGTTTGTTGTGCCATC
atacttcaagtataaatgtctttgtctcgttgtgccgcctgacacttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCGGTGCTCTTTGTAATGAACACAATGTGGTTCATGAAGATCTTAAAAGGCG
acttaac putative branch site (score: 3)
aagtataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaagatcttcattccaaatgaatttattctgtttaaaaaatatatacttcaagtataaatgtctttgtctcgttgtgccgcctgacacttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCGGTGCTCTTTGTAATGAACACAATGTGGTTCATGAAGATCTTAAAAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA