Sequence
atgc intronic sequence ATGC exonic sequencegtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgtattgttccttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G132060_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA15G07760.1 (Glycine max), 3'ss of exon 10
----------------------gtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgtattgttcctt--gccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
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gtagaaattttttacatattcactgtttattttatc-atttattattttaaaaattgataggtctctggctcttttatctcactgacatgtttacttgtcttcacgcgaacagTATGGGCGTCCACTGTATGGAGATGTTTTTGGTGTTCAACAACAAGATCAGCCCAACTATGAG
upper sequence: GRMZM2G132060_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA13G31550.2 (Glycine max), 3'ss of exon 10
------------------------------------------------------------gtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgtattgttccttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
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gtatatatttttttacatattcactgtttttttatcattttttttaaattgataggttccttaattcttctttttcagtgaagagtcccccattcttttatctcactgacatgttgtttacttg-tcttcaatt-cttcatgtgaacagTATGGGCGTCCACTGTATGGAGATGTTTTTGGTGTTCAACAACAAGATCAGCCTAACTATGAG
upper sequence: GRMZM2G132060_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA13G25110.2 (Glycine max), 3'ss of exon 10
--------------------------------gtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgt---attg------ttccttgcc--------aacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
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gtacattttttatattcactcttcttttcatcatttgatttttgaattattatgggtttctgaattttcatttttattaaagggctctcccaccccttttcacctcattgaccacttttcttgtctgcacctaaacagTATGGCCGTCCACTTTATGGAGATGTTTTTGGTGTTCATCAACAAGATCAGCCTAATTATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51592523|gb|CV071669.1|CV071669EST: CCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAG CACGGACNTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAA
genomic: CCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAGgtatgttttc ... ttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctagatgtactcaaggttcctttcatgagctcttgtattgttccttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
ttgttcctt CT-rich tract
ttgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgtattgttccttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAACCTAACTACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG