Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgtccatccatctcctccatggatggaacgcaaacgcagggcctggtctggaacgcacgcgccgtgtcgtgtggacgtgtggtgtccctgtggctcacccgtgcgggtctctgctcggctatgctgtgctgtgcagGCGGACCATCTCCGGCTGATGACGCTGCAACAGATGCACAAGATCCTGACGACGCGGCAGGCGGCCAGGGGCCTGCTGGCGCTCGGCGACTACTTCCAGC

Basic information

species Zea mays
transcript GRMZM2G131961_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131961_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os04g54474.2 (Oryza sativa), 3'ss of exon 9
gtaaccgtccatccatctcctccatggatggaacgcaaacgcagggcctggtctggaacgcacgcgccgtgtcgtgtggacgtgtggtgtccctgtggctcacccgtgcgggtctctgctcggctatgctgtgctgtgcagGCGGACCATCTCCGGCTGATGACGCTGCAACAGATGCACAAGATCCTGACGACGCGGCAGGCGGCCAGGGGCCTGCTGGCGCTCGGCGACTACTTCCAGC
                                           |   |    |   | |  |    ||           ||       | | |  || ||||  | |   ||  ||||   | ||    |||| ||||||||| || |||||||||| |  |||||||||  ||||||||| |||||||||||||||||||||||| ||||| || || ||||| || |||||||||||||
-------------------------------------------gtaaccaaaccaaaccaaa---accaaccgccaaaaactccgatcgcctcattgtctcattcatcatggcatctgg--gact----tgtg-tgtgcagGCAGATCATCTCCGGCAGCAGACGCTGCAGGAGATGCACAGGATCCTGACGACGCGGCAGGCGGCGAGGGGGCTCCTCGCGCTGGGGGACTACTTCCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30306417|gb|CD001090.1|CD001090
EST:     TGGCCACTGCGGTGGAGAAGCTGAAAGAGCTCGTCAACTTCGTCACCCAG                         GCGGACCATCTCCGGCTGATGACGCTGCAACAGATGCACAAGATCCTGACG
genomic: TGGCCACTGCGGTGGAGAAGCTGAAAGAGCTCGTCAACTTCGTCACCCAGgtaaccgtcc ... tgctgtgcagGCGGACCATCTCCGGCTGATGACGCTGCAACAGATGCACAAGATCCTGACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtccctgtggctcacccgtgcgggtctctgctcggctatgctgtgctgtgcagGCGGACCATCTCCGGCTGATGACGCTGCAACAGATGCACAAGATCCTGACGACGCGGCAGGCGGCCAGGGGCCTGCTGGCGCTCGGCGACTACTTCCAGC
          ggctcac  putative branch site (score: 3)