1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatccgttgctgctatgtcatcagtggtttattacttgccctgaccatatttcgtgccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTATCCCTTATTTTTGAACAGAGGAAACATGTCGTGGGATGCATTCTCCTCA
species | Zea mays |
transcript | GRMZM2G131699_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAG GAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTAEST: gi|76010762|gb|DT937932.1|DT937932
genomic: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAGgtatccgttg ... ccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTA
EST: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAG GAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTAEST: gi|78111343|gb|DV529740.1|DV529740
genomic: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAGgtatccgttg ... ccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTA
EST: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAG GAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTA
genomic: TTTGTGGCTAACAACAACGGCAACATGGCTAAAATTTTGGCTGGACGAAGgtatccgttg ... ccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTA
gctatgtcatcagtggtttattacttgccctgaccatatttcgtgccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTATCCCTTATTTTTGAACAGAGGAAACATGTCGTGGGATGCATTCTCCTCA
ccctgac putative branch site (score: 4)
tgccctct putative PPT
tttattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccgttgctgctatgtcatcagtggtttattacttgccctgaccatatttcgtgccctctgcagGAGATACTTTGGGCACAAGAGAACGATCCGACCAAATGCCAAAAGGCTCTATCCCTTATTTTTGAACAGAGGAAACATGTCGTGGGATGCATTCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC