Sequence
atgc intronic sequence ATGC exonic sequencegtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 9
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaa---aattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
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---gtaatttccattttctacttattcat----aatcaagaaaatggtcactattag-actataata-tattcaaaatcaat-ttatttctgaatgcatacatttccttgcatgatccaagcttgtgaacaaataatttctctaacac-cagacttacagttt-aaacattgat--aattgcacagGTTAAGTATACTTGCTGAGATTCTTCGATTTGGTGACCGTGAATTCTACAAAGATTGGTGGAATGCAAAAACAATTGATGAG
upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 9
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacat--gcatgctctcggagaaaattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
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--------------------------------------------------------------------------------ttgtctcatttctagatattagaaaatgttc----acctttgtttttttaagatttagttcatatttgaggcagcttatcattggagtgactgtt-ccaatgtagGTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGAT
upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 9
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttcc----ttttatgctct--ttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
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----------------------------------------------------------------------------------------ttgtctcatttgtagatattagaaaaggttcacctttgattttttaagatttagttaatatttgaggaagcttatcattggagtgactgtcgta-atgtagGTTAAATATATTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACCAGGATTGGTGGAATGCCAAAACTGTTGAAGAT
upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 9
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 9
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttccttttatgctctttcaaat--ttgcatatttgcagtttc-gaacttatat-tcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
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-----------------------------------------gtatgctgtgatcccatctc-tttcaaaataatttgcaaattcgaaaaaccgaaaaaggctaaatctcatacgaatttgatat-ttttagtttcttagagtcggtgatgtaatttcagttactgaacgcaaatctcttgtccaaagGTTAAACATATTGGCAGAGCTTCTCTGCTTCGGGGATCGTGAATTCTACAAAGATTGGTGGAATGCAAAAAGTGTGGGAGAT
upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 9
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
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--------------------------------------------------------------taaaaatataaacagagtttaccaattctattatctttcatttgtctgaatcatattact-------aagacatatcatacttaga----tgcagtgttgcaattatat----------agGTTAAATATACTTGCTGAGCTTCTTCGTTTTGGGGACCGTGAGTTCTATAAAGATTGGTGGAATGCAAAAACAGTTGAGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88756047|gb|DY540188.1|DY540188EST: CCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTG GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAA
genomic: CCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTGgtagtaaatt ... atctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
ttcatct CT-rich tract
ttatattcatctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG