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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtctattatattttcctgcttacttgatgccaatgaacctgaaaagactacttgccacccttgaaaatttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG

Basic information

species Zea mays
transcript GRMZM2G130398_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 3'ss of exon 9
agtctattatattttcctgcttacttgatgccaatgaacctgaa-aagactacttgccacccttgaaaa------tttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
      |  | |||  ||  | |  |   |  |       |||| ||  ||||||| |   |   ||||      ||  || | |   | ||| |||     ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||||
------tgttttttctctaataatatttagaaatcctttttgaataaagctacttgtctgacaaaaaaaaaacagttctcactttcttataatttgttctg-tgcagCATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG

upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA19G17920.1 (Glycine max), 3'ss of exon 8
--agtctattata----ttttcctgcttacttgatgccaatgaacctgaaaagactacttgccacccttgaaaatttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
  | ||| |||||    |  | || ||||  | | | ||||        | | |  |       | |   | |||||   ||         |||| |||   |||| || |||||||| |||||||| || |||||||||| ||| || || ||  |||||||| | ||||||||||| |||||||| ||| |||||
tgaatcttttatagacatgcttctccttaaataa-gtcaattgcttgatataaataatacatttctcacaataattt--tttgcatttgtttgtgccaa---gcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG

upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 3'ss of exon 8
----agtctattatattttcctgcttacttgatgccaatgaacctgaaaagactacttgccacccttgaa--aatttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
     || |   || || |    ||||| | |||     || | | |||     | ||        |||   | || |   |      | ||   |   || |||| |||||||| || || || || || |||||||| || |||||||||||  |||||||| | ||||| || || ||||||||||||||||||
tatttgttttccatgttctgaaacttacataatg-----gatcttcaaattttcattttatttttctgacccagttcatggttattttacattaatggtaa-gcagCATTTATGGGGTACACGATGAGGCCAAGGACAAGGCATTTGAGTTGGAAATGAGCTGGGTTTGTGAGGAGTCAAACCGCCAGCATCAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449736|gb|DR830786.1|DR830786
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCTGA-GGACAAAGCTTTTGAGTTGGAGT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGC-GAAGGACAAAGCTTTTGAGTTGGAGT
EST: gi|32933855|gb|CF038667.1|CF038667
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGGGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     AAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTT
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|12972091|gb|BG267809.1|BG267809
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATATATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGA
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGA
EST: gi|5108169|gb|AI739882.1|AI739882
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|148949400|gb|EC894857.2|EC894857
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927605|gb|CF032417.1|CF032417
EST:     AAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGTTGAAGTTGAAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149009038|gb|EE153768.2|EE153768
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     AAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGTTGAAGTTGCAAAGAT                         AATTTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTG
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTT-ATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTG
EST: gi|211349513|gb|FL214799.1|FL214799
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCG
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCG
EST: gi|32832322|gb|CD972000.1|CD972000
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGGTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGGAGGACAA
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAA
EST: gi|29545051|gb|CB605229.1|CB605229
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGGT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149008297|gb|EE040446.2|EE040446
EST:     AAACTTTCGGAGCTTCCCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|8103349|gb|AW927991.1|AW927991
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71767051|gb|DR964988.1|DR964988
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78081015|gb|DV509427.1|DV509427
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|31353269|gb|CD437626.1|CD437626
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149015369|gb|EE045205.2|EE045205
EST:     AAACTTTCGGAGCTTCCCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149106946|gb|EE188847.2|EE188847
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60351410|gb|DN218383.1|DN218383
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32836004|gb|CD975682.1|CD975682
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|76280504|gb|DV020072.1|DV020072
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32838687|gb|CD978368.1|CD978368
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60396390|gb|DN229259.1|DN229259
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|211354326|gb|FL214826.1|FL214826
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71771504|gb|DR969441.1|DR969441
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32908217|gb|CF013030.1|CF013030
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927665|gb|CF032477.1|CF032477
EST:     AACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|5108035|gb|AI739748.1|AI739748
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60345448|gb|DN212421.1|DN212421
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     AAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGA
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGA
EST: gi|60397420|gb|DN230236.1|DN230236
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71305568|gb|DR788927.1|DR788927
EST:     GTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: GTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|5847108|gb|AW000187.1|AW000187
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927594|gb|CF032406.1|CF032406
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60349038|gb|DN216011.1|DN216011
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71449735|gb|DR830785.1|DR830785
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|148983025|gb|EE028929.2|EE028929
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTTGAGT-GGAGT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTT-GAGTTGGAGT
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGA
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGA
EST: gi|161588502|gb|EY958484.1|EY958484
EST:     CGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: CGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|37375788|gb|CF624359.1|CF624359
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGATGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     AAACTTTCGGAGCTTACCTGCCGGGGAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAACGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927949|gb|CF032761.1|CF032761
EST:     AAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGTTGAAGTTGAAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTTGAGT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTT-GAGT
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAATGCATGACGAACCGAAGGACAAAG-TTTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTT
EST: gi|18177748|gb|BM378958.1|BM378958
EST:     CTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: CTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|211023757|gb|FL452141.1|FL452141
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|94480176|gb|EB709134.1|EB709134
EST:     AAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|113703248|gb|EE680752.1|EE680752
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927994|gb|CF032806.1|CF032806
EST:     AACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32908216|gb|CF013029.1|CF013029
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|149044660|gb|EE047634.2|EE047634
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60342548|gb|DN209521.1|DN209521
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60338881|gb|DN205854.1|DN205854
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|110524744|gb|EE028928.1|EE028928
EST:     AAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78120695|gb|DV539079.1|DV539079
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927715|gb|CF032527.1|CF032527
EST:     AACCTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32834256|gb|CD973934.1|CD973934
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78120696|gb|DV539080.1|DV539080
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|111191295|gb|EE289431.1|EE289431
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|71771503|gb|DR969440.1|DR969440
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|60347522|gb|DN214495.1|DN214495
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|211354331|gb|FL214831.1|FL214831
EST:     ACTT-CGGAAGCT-ACCTGCGGGGAAGGCATTTGTTGAATTTGCAA-GAT                         AATTTATGGAGTGCATGACGAA
genomic: -CTTTCGGA-GCTTACCTGCCGGGAAGGCATT-GTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAA
EST: gi|32927914|gb|CF032726.1|CF032726
EST:     AAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGTTGAAGTTGAAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927593|gb|CF032405.1|CF032405
EST:     AAACTTTCGGAGTTTACCTGCCGGGAAGGCATTGTTGAAGTTGAAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|32927584|gb|CF032396.1|CF032396
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|78026023|gb|DV494410.1|DV494410
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|148945159|gb|EC890359.2|EC890359
EST:     AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
EST: gi|76289821|gb|DV029389.1|DV029389
EST:     AAACTTTCGGAGCTTACCTCCCGGGAAGGCATTGTTGAAGTTGCAAAGAT                         AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT
genomic: AAACTTTCGGAGCTTACCTGCCGGGAAGGCATTGTTGAAGTTGCAAAGATgtatgtctat ... caaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactacttgccacccttgaaaatttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG
                             ttctgac  putative branch site (score: 2)
                ttgaaaatttacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtctattatattttcctgcttacttgatgccaatgaacctgaaaagactacttgccacccttgaaaatttacattctgacaaaatgtgtcaaaatgcagAATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA