1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctttctatgacatttatgagcgcagttggcattaagctctaaactgagtgctcactggtcatattaagctaagacatgtgtaatttgtataatgtacagAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
species | Zea mays |
transcript | GRMZM2G130351_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAG AAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCTEST: gi|148953215|gb|EE152697.2|EE152697
genomic: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAGgtatatggta ... taatgtacagAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
EST: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAG AAAATGGTCAGCAACCATTAAAGAAACA-GAAAAGGACEST: gi|76021633|gb|DT948803.1|DT948803
genomic: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAGgtatatggta ... taatgtacagAAAATGGTCAGCAACCATTAAAGAA-CAAGAAAAGGAC
EST: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAG AAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
genomic: GTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAGgtatatggta ... taatgtacagAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
tgagtgctcactggtcatattaagctaagacatgtgtaatttgtataatgtacagAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
tgctcac putative branch site (score: 13)
taatttgtataatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttctatgacatttatgagcgcagttggcattaagctctaaactgagtgctcactggtcatattaagctaagacatgtgtaatttgtataatgtacagAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - tgacatt
- - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - -tgctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt