1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcaggtttgaactacattgttagcatgtctttccaaccattttctgtttcttttctttgcaagttaacgtcaatgcagcttcagtattgttttctacagATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATGAATGTTGCCTATTTCCTGGAAATCGTTGTCATCTAAAGTGCTTCTGACA
species | Zea mays |
transcript | GRMZM2G130332_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCTGTTGTTCACTAG ATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATGEST: gi|32832613|gb|CD972291.1|CD972291
genomic: GATCTGTTGTTCACTAGgtcagtttta ... ttttctacagATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATG
EST: ACATGACTGGTCCTGCAGAGGCCGTCTTTTATGGATCTGTTGTTCACTAG ATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATG
genomic: ACATGACTGGTCCTGCAGAGGCCGTCTTTTATGGATCTGTTGTTCACTAGgtcagtttta ... ttttctacagATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATG
tgtttcttttctttgcaagttaacgtcaatgcagcttcagtattgttttctacagATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATGAATGTTGCCTATTTCCTGGAAATCGTTGTCATCTAAAGTGCTTCTGACA
agttaac putative branch site (score: 6)
ttgttttct putative PPT
tattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggtttgaactacattgttagcatgtctttccaaccattttctgtttcttttctttgcaagttaacgtcaatgcagcttcagtattgttttctacagATTTATCTTGATGCACTGCAGAATGAATGGGCTTACTAGTTTGCTGGTATGAATGTTGCCTATTTCCTGGAAATCGTTGTCATCTAAAGTGCTTCTGACA
- - - - - aactaca
- - - - - - - - - - - -gcatgtc
- - - - - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcag