1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttattaccttaactcacagtacatttatttaattcacatgctaataggaaacactttattctggtattagtttttttagttgaaaaaacttaagtttgtcattttatttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATATTACAACCATCTTTAGGAGGTAATGCAAGAACGGCTATTATCTGTACA
species | Zea mays |
transcript | GRMZM2G129569_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCGCTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCAC-CGCATEST: gi|19822777|gb|BQ048801.1|BQ048801
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCACTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|18450431|gb|BM428709.1|BM428709
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCACTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|18649565|gb|BM498384.1|BM498384
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CTTGCCCTTGGCACTG-CATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|87152686|gb|DY397475.1|DY397475
genomic: CTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCACTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|87153940|gb|DY398729.1|DY398729
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCACTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|18649415|gb|BM498234.1|BM498234
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: CATATTAACAGAAGTTTACTTGCCCTTGGCACTGTCATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATEST: gi|19822527|gb|BQ048551.1|BQ048551
genomic: CATATTAACAGAAGTTTGCTTGCCCTTGGCACTGTCATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
EST: ATTAGGAAACTAAG CATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
genomic: ATTAGGAAACTAAGgttattacct ... atttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCAT
ctggtattagtttttttagttgaaaaaacttaagtttgtcattttatttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATATTACAACCATCTTTAGGAGGTAATGCAAGAACGGCTATTATCTGTACA
ttttattt CT-rich tract
aaaaaacttaagtttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattaccttaactcacagtacatttatttaattcacatgctaataggaaacactttattctggtattagtttttttagttgaaaaaacttaagtttgtcattttatttatgcagCATGGGGAGTAATGCACACATACCATACAGAGATTCAAAGCTCACACGCATATTACAACCATCTTTAGGAGGTAATGCAAGAACGGCTATTATCTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC