Sequence
atgc intronic sequence ATGC exonic sequencegtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G129155_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 9
-------------gtgcgtaactggacagtgg-ttttcatcatatgttgata-agcgttgt--cacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
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gttcgtgattttgttgcatgttcaattacaaccttttcattatgttgtaccacatcattgttctataatgaagttatagaactttttacacagGATGTTGACCCTTGTGAAGATGTTACCGATGAAGACATCCGTATGGCTATACAGAACGCAACTGGTCCTAGGAGTGCTTTGTTCGTACCTGAG
upper sequence: GRMZM2G129155_T02 (Zea mays), 3'ss of exon 9
lower sequence: EFJ15047 (Selaginella moellendorffii), 3'ss of exon 9
gtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
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---------------------------gtgcgttttttagttttgttatacgtccttctaacatttttc--tacagGAGGTTGATCCATGTGATGATCTGACTGATGAAGATATACGAACAGCCATTCAAAATGCCACTGGTCCAAAAAATGTTCTGTTTGTGCCCGAG
upper sequence: GRMZM2G129155_T02 (Zea mays), 3'ss of exon 9
lower sequence: EFJ37641 (Selaginella moellendorffii), 3'ss of exon 9
gtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
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---------------------------gtgcgttttttagttttgttatacgtccttctaacatttttc--tacagGAGGTTGATCCATGTGACGATCTGACTGATGAAGATATCCGAACAGCCATTCAAAATGCCACTGGTCCAAAAAATGTTCTGTTTGTGCCCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32832868|gb|CD972546.1|CD972546EST: GAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAG GAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGTATGGCTATT
genomic: GAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaact ... atcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
tgttgat putative branch site (score: 4)
agtctattaaatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATTCAAAATGCAACTGGTCCTAGAAGTGCTCTGTTTGTACCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT