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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgccatgtacggtcattttttttacagagttgagaggagtacccatgccgtttcgaataaaagttgcctgcgtttgttccttccaagtgcgtgaattggttctttcttgttttttccagTGCTACAATAAGCGAGCCTCTCCTTTTGTTCTACTTCCCAGATTTTGTGGTGTTGCGAAAGTTCCACCTGTCCGAACTGCTCTTCGACACTAGTAGTAAA

Basic information

species Zea mays
transcript GRMZM2G126900_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88752034|gb|DY536175.1|DY536175
EST:     TCGTTCCAAGTGTCCATGTACCATATACATATATATAGACTACGAATACA                         TGCTACAATAAGCGAGCCTCTCCTTTTGTTTTACTTCCCAGATTTTGTGGT
genomic: TCGTTCCAAGTGTCCATGTACCATATACATATATATAGACTACGAATACAgtatgtgtgc ... ttttttccagTGCTACAATAAGCGAGCCTCTCCTTTTGTTCTACTTCCCAGATTTTGTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctgcgtttgttccttccaagtgcgtgaattggttctttcttgttttttccagTGCTACAATAAGCGAGCCTCTCCTTTTGTTCTACTTCCCAGATTTTGTGGTGTTGCGAAAGTTCCACCTGTCCGAACTGCTCTTCGACACTAGTAGTAAA
                               ttggttctttcttgtt  CT-rich tract
                                          ttgtttttt  TA-rich tract