Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG

Basic information

species Zea mays
transcript GRMZM2G126795_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 3'ss of exon 8
---gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgct-agAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
    |     |||| ||  |||||||||| ||||     || |  ||| ||||  |   ||||  |     || | ||| ||||||    | |  | ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
gtatttcttgctctgttccacagttcattttgca-----cact--tgtgttattttctgaacttggattcatgatatttatgtattcaatcttctttagAGTGTGATGGAGTATGAAGAACATGAAAAGAGAGCATGGAGTGTTGATTTTTCTCGAACAGAACCCTCGATGCTAGTATCTGGGAGTGATGATTGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 8
---------------------------------------------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgag-----gcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                              |    |   || || |    |  || |  |||| |   ||||   ||| | ||   || ||       |   ||| | |  | | |  |    ||| ||||| | |||||||||||||||||||| ||  | ||||||||||||||||||||  ||||||| || || ||||| |||||||| || || || || |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagctctttgggtatcttaattcattaatatttttttaatgtcatgtgcttgcttaaattttctacagattatttactcatggctatcatttttcct--tttgc-agAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 8
---------------------------------------------------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgag-gcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                                    | | || ||  |  ||  |||     ||  |||  | |||||  | | |  | || | |     |   ||| | |  |   ||      ||  ||||| | |||||||||||||||||||| ||  | ||||||||||| || |||||  ||||||| || || ||||| |||||||| || || || || |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagatctttgggtatcttcattcattaatattgttttgattgtcatgtgc-ttgcttaagttttctacagattatttacgcatggctatcat---tttaactttggcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTAGACTTTTCAAGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
---------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
          || |||   ||| | |||   ||  ||  ||  |  |||    | | || | |    | | |   |    ||||| ||||   |||   |  ||||| | ||||| ||||||||||| || ||| | || ||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| ||||||
gtgagtactttacccaaagtatctaacatcgcac-ctataa--gatatt--catctcatgaattctgcagcgtatttgaatttttatgtaaactga---ggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 8
gtatccactctattttacagttc---attctgcaatggccattgctgtattataattcaaactgaggcatgtg-gtttttgtgtat---tgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
     |  |  | |  | | |||     ||  || || | || | | | |  |  |  | |   |   || |   | | ||   ||   |||    |   |||||||||||||||||||||||||||| ||| | |||||||||||||||||||| || ||||| || |||| ||| |||||||| ||||| ||||| |||
--ggtcctttgaatgaaaaattctgggctcgccactgactatagatttgtccttgtatatatatatatatatatatatatgctaataaatgttttttatcagAGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------gtatcca-ctctattttacagttcattctgcaatggccat-tgc-tgtattataattcaaactg--aggcatgtggtttttgtgtattgtgaca-------tgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                        | |  | ||| |||  |   |  || |   ||||   || ||| |  |  ||  |  || ||   |   || | |  |||||  | |  ||         | |||||||||||||||||| || |||||||| ||  |||||||||||||||||||||| || || || ||||||||||| ||||| || ||||| || ||||||
gtagaaattgtatctcttctcttctgttaatctcaattacatcatatatgcacaaatgttgatctgcattcacaattttctaacctcccaatgatttcgagtttgttcactaagattctttttcttctagAGTGTGATGGAATACGAGGAGCATGAAAAGCGAGCATGGAGTGTTGATTTTTCACGCACTGAACCTTCAATGCTCGTATCCGGCAGTGATGACTGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 3'ss of exon 8
----------------------------------------------------------------------------------------------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactga--ggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                                                                               ||| || ||   |||  |  |  |   ||| || |    | ||||   |   || || |    | |||||  |  |||   ||  |    | | ||||||| ||||| ||||| ||||| |||||  | || ||||||||||| ||||| || || || ||||||||||| || ||||| ||||| ||| |||||
gtaggcttgaaaatttggccacttaacataggttcgttgatgatgtccttaattgtggttccagaatgagcgacatatagctttacaatgtgtcatattcattcggatttttaaattttgacgcattg-cttcggatgtacggtttgtctaaatatttgacatgttctgcttgc-catcatatattaccagAGTGTCATGGAGTATGAGGAGCACGAGAAGCGTGCCTGGAGTGTTGACTTTTCCCGGACGGATCCTTCAATGCTGGTCTCTGGAAGTGATGATGGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S135_17V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------gtatccactctattttacagttcattctgc--aatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                               |   | | | || |  |  |   ||||    | |  || | ||   |||   | |       |||  | | |||   |  |   |    |   ||||  | ||||||||||| |||||||| || || || |||||||| |||||||| ||||| || ||  | |||||||| || || ||||| ||| |||||
gtctgtccctcattttgatgacgttaagttgaagttaccaccccttgaattatttttttgtgtatgttggtctgtttgaagttcacttcta-gttaatgtgcggtgaatggccagggatttgacttcaaattttttttacagAGCATTATGGAATATGAGGAGCATGAAAAGAGGGCCTGGAGTGTGGATTTTTCACGAACTGATCCGACCATGCTAGTCTCGGGAAGTGATGATGGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S180_148V6.1 (Physcomitrella patens), 3'ss of exon 8
---------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
         |        | ||  || ||   | |  | |   |  | |   || |  |  |   |  |  |  || |    |  ||   ||||  | ||| ||||||||||||||||||| || ||||| ||  | || |||||  | ||||||||||| ||||| || |||||||| || ||||| ||||||||| | |||
atacaagatgagggggagcaatcctagagaaaaattagta--cgtgagtaaggtttacttgtgttacttatgttatctt-cctaagtaatttgtttcgtgc-agAGTGTGATGGAATATGAGGAACATGAAAAGCGTGCTTGGAGCATCGATTTTTCTCGTACAGATCCATCAATGCTGGTTTCTGGAAGTGACGATGGAAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S86_153V6.2 (Physcomitrella patens), 3'ss of exon 8
-------------------------------------------------------------------------------gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                                                                    ||| ||         |   |   |   || |    |     || |  |||| || |     |      ||    | |  |||      ||||  | | ||| |||||||||||||| || || ||||||||||| |||||||| ||||| || ||  | ||| |||| || || || || ||| |||||
gtttgttttcattatgctcatgccgaagtcatagatatgtcttgatgatgtaaaatccgggctttaggtacctcacccgcccatcacactcccccttgatgtgtgtaggtgtgtctgacgtgtctttctggttcacacaggcaagttctcagttgacttgtaatgatgctgcagAGCATAACGGAGTATGAAGAGCATGAAAAGAGGGCATGGAGTGTGGATTTTTCACGAACTGATCCCACTATGTTAGTCTCGGGAAGCGATGATGGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
-----------------------------------------------------------gtatccactctattttacagttcattctgcaa-----tggccat-tgctgtattataattcaaa----ctgaggcatgtggttt-ttgtgtattgt-gacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                                                            |      ||| | |||   ||   | || ||     ||    | | |  |||| || ||| |     || | |  | |  |    |||      | |   |  ||||| || |||||||||||||| || |||||| | || |||||||| |||||||| ||||| || ||  | ||||| || || || ||||| ||  |||||
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgttattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: EFJ20512 (Selaginella moellendorffii), 3'ss of exon 8
gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG-
                            | | | | |  |   | | | |   |     ||       |   ||||||   ||    | ||| ||||||| ||||| || |||||||| |||| |||||| ||||| || ||||| ||  | || || ||  |||||||||| ||||||||||||||  | ||| 
----------------------------gtagttgtctcttgggaactctttctttgcttg--tttgtttacttttgtacgtttctccttgc-agAGTGTCATGGAGTACGAAGAGCACGAGAGAAGAGCCTGGAGCGTCGATTTCTCCAGGACGGACCCGACAATGCTAGTGTCTGGGAGTGACGACGGAAAGG

upper sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
lower sequence: EFJ28584 (Selaginella moellendorffii), 3'ss of exon 8
gtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
                            | | | | |  |   | | | |   |     ||       |   ||||||   ||    | ||| ||||||| ||||| || |||||||| |||| |||||| ||||| || ||||| ||  | || || ||  |||||||||| ||||||||||||||  | |||
----------------------------gtagttgtctcttgggaactctttctttgcttg--tttgtttacttttgtacgtttctccttgc-agAGTGTCATGGAGTACGAAGAGCACGAGAGAAGAGCCTGGAGCGTCGATTTCTCCAGGACGGACCCGACAATGCTAGTGTCTGGGAGTGACGACGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG
     attataattcaaact  TA-rich tract