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gtacagtcaacatctgcacttctggtaatgatatataaaactgatagctgatgttgccctttttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA
species | Zea mays |
transcript | GRMZM2G126517_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGGNAAAAT-ATANAGTCTGNCA-TACAGACAGCTCTAAAAGAGGCAAG GGATAAA-GGATAATAGGAA-TGCGATC-CTCCCTTC-TGCTTGAA-GAGTEST: gi|60347683|gb|DN214656.1|DN214656
genomic: AGGG-AAAATTATAGAGTCTG-CAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|211233176|gb|FL456644.1|FL456644
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|8516322|gb|BE123048.1|BE123048
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: AAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|71533571|gb|DR784330.1|DR784330
genomic: AAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|71764026|gb|DR961963.1|DR961963
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|211233175|gb|FL456643.1|FL456643
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTBTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|88748923|gb|DY533064.1|DY533064
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|74236391|gb|DT644305.1|DT644305
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|149082842|gb|EE172068.2|EE172068
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|31355559|gb|CD439916.1|CD439916
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGGATAAA-GGATAATAAGAAATGCGATCACTCCCTTCATGCTTGAEST: gi|71764027|gb|DR961964.1|DR961964
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGG-ATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGA
EST: TCAGGGAAAATTATAGAGTCTGCTATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTEST: gi|211420627|gb|FL480892.1|FL480892
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
EST: TCAGGGHAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGG GGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
genomic: TCAGGGAAAATTATAGAGTCTGCAATACAGACAGCTCTAAAAGAGGCAGGgtacagtcaa ... tttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGT
cacttctggtaatgatatataaaactgatagctgatgttgccctttttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA
tgttgccctttttttc CT-rich tract
taatgatatataaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtcaacatctgcacttctggtaatgatatataaaactgatagctgatgttgccctttttttctcagGGATAAAAGGATAATAGGAAATGCGATCACTCCCTTCATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG