1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagctcccggtaacattactgtattaggattaggatgtgttgccgataagccctactacgcatctcacgccgacccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCGTGGGGAAATCGTTGAC
species | Zea mays |
transcript | GRMZM2G124918_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTG GTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCEST: gi|14243814|gb|BG841530.2|BG841530
genomic: TGAGGAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTGgtgagctccc ... ccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTC
EST: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTG GTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCEST: gi|95107983|gb|EB740212.1|EB740212
genomic: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTGgtgagctccc ... ccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTC
EST: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTG GTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCEST: gi|71766083|gb|DR964020.1|DR964020
genomic: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTGgtgagctccc ... ccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTC
EST: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTG GTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTC
genomic: GAACGAGAGCGCTCTTAAATTTGGATGGTTTTTCCTATTCTACTTGgtgagctccc ... ccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTC
ttaggatgtgttgccgataagccctactacgcatctcacgccgacccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCGTGGGGAAATCGTTGAC
atctcac putative branch site (score: 50)
cccccac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcccggtaacattactgtattaggattaggatgtgttgccgataagccctactacgcatctcacgccgacccccacacagGTTCACATCGCCTTCTGCGTGTACGCAGCTGTTTCTCCTTCGATTCTCTTCGTGGGGAAATCGTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT