1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgatctctgatgatcaactgtatgatgttggtattctatgaatttaattgttgagcttactttactctatgagaatccacaacacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACGCTGAGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCAC
species | Zea mays |
transcript | GRMZM2G120517_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|7162396|gb|AW520018.1|AW520018
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|60342201|gb|DN209174.1|DN209174
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|24934386|gb|CA452604.1|CA452604
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|71327463|gb|DR800349.1|DR800349
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|67022725|gb|CO451474.1|CO451474
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|7216381|gb|AW562503.1|AW562503
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|101393103|gb|EB818482.1|EB818482
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|60397958|gb|DN230774.1|DN230774
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|74246091|gb|DT654005.1|DT654005
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|7204636|gb|AW559169.1|AW559169
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|60349847|gb|DN216820.1|DN216820
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|5740004|gb|AI947694.1|AI947694
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGCCCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGCCCAAGACGCATTCTTCAGAGACTCCEST: gi|211351874|gb|FK984289.1|FK984289
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|76920121|gb|DV168019.1|DV168019
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|76292512|gb|DV032080.1|DV032080
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|211216297|gb|FL460273.1|FL460273
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|60342528|gb|DN209501.1|DN209501
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|71759931|gb|DR957868.1|DR957868
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|14244899|gb|BG842837.2|BG842837
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACEST: gi|88753851|gb|DY537992.1|DY537992
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTTTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGATTACEST: gi|7145161|gb|AW506642.1|AW506642
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
EST: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAG GTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
genomic: TTCTGGTCCTACCTACAGATGCTGCTTTATTTGAGGACCCAAAGTTCAAGgtgatctctg ... acacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTAC
tatgaatttaattgttgagcttactttactctatgagaatccacaacacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACGCTGAGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCAC
agcttac putative branch site (score: 3)
atttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctctgatgatcaactgtatgatgttggtattctatgaatttaattgttgagcttactttactctatgagaatccacaacacaaccagGTCTATGCGGAGAAATATGCAGAGGACCAAGACGCATTCTTCAGAGACTACGCTGAGGCTCATGCTAAACTGAGCGAATTGGGTGCAAAGTTCCAACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG