1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagcatttcaatttggttgcacctttcatgggttacttgtctgcaggtcgtatcttttgtcatatcattaggagttttgcttactttggtcaaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCATACAG
species | Zea mays |
transcript | GRMZM2G117153_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAAA-TTGGATTTTTCTGAAGAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCEST: gi|89759662|gb|DY688411.1|DY688411
genomic: AAAAATTTGGA-TTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
EST: ATACATGTGGGCCGTTTTGGACGTGNNNNNNNTTTGGATTTTCTGAAAAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCEST: gi|83278466|gb|DV942474.1|DV942474
genomic: ATACATGTGGGCCGTTTTGGACGTGAAAAAAATTTGGATTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
EST: ATACATGTGGGCCGTTTTGGACGTGNNNNNNNTTTGGATTTTCTGAAAAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCEST: gi|5901165|gb|AW042265.1|AW042265
genomic: ATACATGTGGGCCGTTTTGGACGTGAAAAAAATTTGGATTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
EST: AAAAATTTGGATTTTCTGAAAAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCEST: gi|149069921|gb|EE158321.2|EE158321
genomic: AAAAATTTGGATTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
EST: AAAAATTTGGATTTTCTGAAAAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCEST: gi|78022194|gb|DV490581.1|DV490581
genomic: AAAAATTTGGATTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
EST: AAATTTGG-TTTTCTGAAAAG GGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
genomic: AAATTTGGATTTTCTGAAAAGgtgagctttt ... caaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCC
ggtcgtatcttttgtcatatcattaggagttttgcttactttggtcaaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCATACAG
tgcttac putative branch site (score: 38)
atatcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcatttcaatttggttgcacctttcatgggttacttgtctgcaggtcgtatcttttgtcatatcattaggagttttgcttactttggtcaaaatacagGGTTATGGAGAGGCTCCCAGGAGCAAGGATTGCCTTCGTTGGAGACGGGCCATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - -tggttgc
- - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac