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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatggtttccaaagccacctgttgagcataaaaaatattcgtgaggtattgacgctagattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACGATGACTTGCCCCCTCTCGAGAAGAATATGAACCACCTGAACCTCGACGA

Basic information

species Zea mays
transcript GRMZM2G114758_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12972397|gb|BG267961.1|BG267961
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|110193278|gb|EC875176.1|EC875176
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATTTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78544567|gb|DV622065.1|DV622065
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACAAGGAGGAGGGATCTGAAGGTGATTCAG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGG-G--ATCTGAAGGTGATTCAG
EST: gi|86468292|gb|DY234662.1|DY234662
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|6601669|gb|AW256065.1|AW256065
EST:     GAAGTCATGGTTATCAAGTANCTCGAGTGTTCCAAAGCCNCCTGTAAACG                         GGGCAGAGGAATCNCGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|211377879|gb|FL093310.1|FL093310
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|71307452|gb|DR789931.1|DR789931
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|83279425|gb|DV943433.1|DV943433
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|71307450|gb|DR789930.1|DR789930
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|94473540|gb|EB702498.1|EB702498
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|88750787|gb|DY534928.1|DY534928
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|60345140|gb|DN212113.1|DN212113
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78074927|gb|DV503361.1|DV503361
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATTTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78118561|gb|DV536945.1|DV536945
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|89251519|gb|DY623305.1|DY623305
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|211480276|gb|FL093313.1|FL093313
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCAAAAGCCACCTGTAAACT                         GGGCAGAGGAATCACNGCAAAACACGGGAGGTATCTGAANGTGATTCAGAC
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGG-AGGGATCTGAAGGTGATTCAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagccacctgttgagcataaaaaatattcgtgaggtattgacgctagattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACGATGACTTGCCCCCTCTCGAGAAGAATATGAACCACCTGAACCTCGACGA
                                   tattgac  putative branch site (score: 2)
             agcataaaaaatatt  TA-rich tract