1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcatcaccttccgtgcttccttgttactgctatttactgcatctggttcagctctagggccttttatataaatccctaattacgtatggtgtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCCAAGGAAGGGGAGTGCATTTCACCATCGCACCGGACTCCCCGGCCACAC
species | Zea mays |
transcript | GRMZM2G113619_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|37399815|gb|CF637245.1|CF637245
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|19769762|gb|BQ034483.1|BQ034483
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|6827480|gb|AW331123.1|AW331123
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|60338944|gb|DN205917.1|DN205917
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|50325342|gb|CO520468.1|CO520468
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTTTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|86471507|gb|DY237877.1|DY237877
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|78106313|gb|DV524731.1|DV524731
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|93283252|gb|EB675516.1|EB675516
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGAC--AG--A- GA--CAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|19769358|gb|BQ034079.1|BQ034079
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|71311804|gb|DR792363.1|DR792363
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|91877838|gb|EB407795.1|EB407795
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|211143061|gb|FL281156.1|FL281156
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|60337669|gb|DN204642.1|DN204642
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|19822097|gb|BQ048121.1|BQ048121
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCGTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCEST: gi|78106314|gb|DV524732.1|DV524732
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
gttcagctctagggccttttatataaatccctaattacgtatggtgtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCCAAGGAAGGGGAGTGCATTTCACCATCGCACCGGACTCCCCGGCCACAC
ccctaat putative branch site (score: 1)
tctgtcc putative PPT
ttttatataaatccct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcaccttccgtgcttccttgttactgctatttactgcatctggttcagctctagggccttttatataaatccctaattacgtatggtgtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGCCAAGGAAGGGGAGTGCATTTCACCATCGCACCGGACTCCCCGGCCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-catcacc
- - - - - - -tgcttcc
- - - - - - - - - - - - tactgct
- - - - - - - - - - - - - - - - - - ctgcatc
- - - - - - - - - - - - - - - - - - - - - - - ttcagct