Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctcagtgttcacggctgctgcttcctgtgactggttcatgagccacactgtctaatcacctcgttgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG

Basic information

species Zea mays
transcript GRMZM2G112337_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112337_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g40840.1 (Oryza sativa), 3'ss of exon 9
---gtattctcagtgttcacggctgctgcttcctgtgactggttcatgagccacact---gtctaatcacctcgttg-------cctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG---
      ||||      || |   |  |  |||   || |||| ||   | ||| |      || | |  | |  ||        | |||||||||||||| ||||| ||||| |||||||| || || ||||||||||| ||||| || ||||||||||| || ||||| || ||   ||| ||||||| |    
gtacccttctgtccaatccccattaatctttcgcatgtctggctctaaaaccatatctcattccatttgctttcttccaaaactcatttcagGACCAGAAGAAGATAAACGACCAGCTAGCTGCAGAGCAGGAGAAGCTCTTCGGCTCGAAACCGAGCCCAGCCCGGCCCCAATC---CTCAAGGAAGGCGCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013335|gb|DT940505.1|DT940505
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|60351440|gb|DN218413.1|DN218413
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|87157169|gb|DY401958.1|DY401958
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149015046|gb|EE044792.2|EE044792
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|88756750|gb|DY540891.1|DY540891
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148928684|gb|EC873287.2|EC873287
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148975119|gb|EE025688.2|EE025688
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148995697|gb|EE034920.2|EE034920
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71771989|gb|DR969926.1|DR969926
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71763124|gb|DR961061.1|DR961061
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|67021761|gb|CO450510.1|CO450510
EST:     AATACAAAATCCTGAGGCANGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCANNNAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|76289490|gb|DV029058.1|DV029058
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71773221|gb|DR971130.1|DR971130
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149070597|gb|EE159002.2|EE159002
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71324223|gb|DR798814.1|DR798814
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149100804|gb|EE186898.2|EE186898
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|74246102|gb|DT654016.1|DT654016
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|76015435|gb|DT942605.1|DT942605
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149081897|gb|EE171058.2|EE171058
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149088740|gb|EE177864.2|EE177864
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|89249959|gb|DY621745.1|DY621745
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|211026266|gb|FL455139.1|FL455139
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCSACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71759353|gb|DR957290.1|DR957290
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71306089|gb|DR789194.1|DR789194
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|15426945|gb|BI542767.1|BI542767
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCCCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148947543|gb|EC893016.2|EC893016
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|71435944|gb|DR816994.1|DR816994
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149078381|gb|EE167156.2|EE167156
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|101402370|gb|EB822760.1|EB822760
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|22820000|gb|BU500090.1|BU500090
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|89763677|gb|DY690772.1|DY690772
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148999824|gb|EE036848.2|EE036848
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|67020793|gb|CO449542.1|CO449542
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|211163232|gb|FL071797.1|FL071797
EST:     GGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: GGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149098529|gb|EE184515.2|EE184515
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148933839|gb|EC877798.2|EC877798
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|15352994|gb|BI502605.1|BI502605
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|78112666|gb|DV531060.1|DV531060
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|149096272|gb|EE181982.2|EE181982
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|211373071|gb|FL457566.1|FL457566
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
EST: gi|148978441|gb|EE026169.2|EE026169
EST:     AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGG                         GACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC
genomic: AATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 189

TGGCGTGGCCTTCACCTACGACGGCGTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 54

TGGCGTGGCCTTCACCTACGACGGCGTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 58

TGGCGTGGCCTTCACCTACGACGGCGTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG


Block sizes: 42 (upstream exon), 46 (downstream exon)
Score: 56

TGGCGTGGCCTTCACCTACGACGGCGTCCCTCTTCTTGCGATGCTGGACGAATACAAAATCCTGAGGCAGGAGAAGGAAGACGAGAAGCGACGAATGAGGgtattctcag ... tgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcctgtgactggttcatgagccacactgtctaatcacctcgttgcctttcagGACCAGAAAAAGATGAACGAACAGCTAGCCGCCGAACAGGAGAAGCTGTTCGGGTCAAAACCGAGCCCCGCGCGGCCGCAGTCGTCCTCGAGGAAGGTGG
                              gtctaat  putative branch site (score: 56)
                                       cctcgttgcctttc  putative PPT