1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggtgcttcacctacaaaagcttgggacatctccggatcaaagacattcgagatgtacgaacacggttgatcttccctttgttccttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAGCCAAGAATGCCAGCCAGGCCAAGGAGTTCGCCGGTGCACTCGGCTGGA
species | Zea mays |
transcript | GRMZM2G111954_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAG GTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAEST: gi|148936270|gb|EC880348.2|EC880348
genomic: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAGgtatggtgct ... ttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGA
EST: TGAACAGGATTAAAGAGATCGGAGCAAGTTATGGCAAGAGTCCAACCCAG GTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAEST: gi|67034494|gb|CO463044.1|CO463044
genomic: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAGgtatggtgct ... ttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGA
EST: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAG GTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAEST: gi|211142180|gb|FL083863.1|FL083863
genomic: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAGgtatggtgct ... ttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGA
EST: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAG GTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGA
genomic: TGAACAGGATTAAAGAGATCGGAGCAAGCTATGGCAAGAGTCCAACCCAGgtatggtgct ... ttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGA
aagacattcgagatgtacgaacacggttgatcttccctttgttccttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAGCCAAGAATGCCAGCCAGGCCAAGGAGTTCGCCGGTGCACTCGGCTGGA
ggttgat putative branch site (score: 5)
ttgatcttccctttgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgcttcacctacaaaagcttgggacatctccggatcaaagacattcgagatgtacgaacacggttgatcttccctttgttccttcgtttcagGTGTCTCTGAACTGGCTGACCTGCCAGGGGAACGTGGTGCCAATCCCCGGAGCCAAGAATGCCAGCCAGGCCAAGGAGTTCGCCGGTGCACTCGGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA