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gtaatcaatggtaaaccatttacatgtttacctattacagggaaatcattttgtgatttagattctagtaaatgaacatgaatgattttcatccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTTTCCACGGTGGAGATAAGATCGGTATAGTTGGGCGAACAGGAAGTGGAA
species | Zea mays |
transcript | GRMZM2G111903_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCACCAGACTGGCCCCNAAGTTGGCAGGGTGGACCTTAAAGATTTGAAG ATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTEST: gi|76292142|gb|DV031710.1|DV031710
genomic: AGCACCAGACTGGCCCC-AAGTTGGCAGGGTGGACCTTAAAGATTTGAAGgtaatcaatg ... catccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGT
EST: CAGCACCAGACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAG ATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTEST: gi|12007854|gb|AF204901.1|AF204901
genomic: CAGCACCAGACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAGgtaatcaatg ... catccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGT
EST: CAGCACCAGACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAG ATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTEST: gi|18964666|gb|BM661136.1|BM661136
genomic: CAGCACCAGACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAGgtaatcaatg ... catccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGT
EST: GACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAG ATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGT
genomic: GACTGGCCCCAAGTTGGCAGGGTGGACCTTAAAGATTTGAAGgtaatcaatg ... catccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGT
atcattttgtgatttagattctagtaaatgaacatgaatgattttcatccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTTTCCACGGTGGAGATAAGATCGGTATAGTTGGGCGAACAGGAAGTGGAA
ttttcatcc CT-rich tract
atttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaatggtaaaccatttacatgtttacctattacagggaaatcattttgtgatttagattctagtaaatgaacatgaatgattttcatccaacagATTAGATACAGACAAGATGCTCCTCTTGTATTACATGGAATCACCTGCAGTTTCCACGGTGGAGATAAGATCGGTATAGTTGGGCGAACAGGAAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA