Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacttctgtttgactgtatatctgttccaatcttcaatagacgaattaacatactgtggtatgtgcggtgtacatgctaaatttttgaacttcaatataatctctctgataaatttatatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG

Basic information

species Zea mays
transcript GRMZM2G111713_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111713_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g45300.1 (Oryza sativa), 3'ss of exon 10
-------gtaagctacttctgtttgactgtatatctgttccaatcttcaatagacg-aattaacatactgtggtatgtgcggtgtacatgctaaatttt-tgaacttcaatataatctctctgataaattta-tatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG
          | ||  || |  |||| ||   ||   ||   |||||  | | | |  | |   ||   ||  ||  ||      | |||  |  | |  | | | ||  | | ||   ||  ||  ||||| | |||| ||| |  || | |  ||||||| ||    |  ||         ||||||||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||| || || || ||||||
gtaagttaagatctgattttccttgattgctgattgttttttatcttgtacatatgtgactcggatcaagttatagatgttaaa-atatgtcagctctaataaccatccgtttcattattc--atgcatttaatgtttgctgtccagtgatattatgattggttaactataaaa---------ctttgcagATTGGACTCGATAAAAATGACCTTGACAAAGCTTTCATACAGCTTACGCTTGAATTCGTCACTAAACAG

upper sequence: GRMZM2G111713_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0030g00010.t01 (Vitis vinifera), 3'ss of exon 5
gtaagctacttctgtttgactgtatatctgttccaatcttcaatagacgaattaacatactgtggtatgtgcggtgtacatgctaaatttttgaacttcaatataatctctctgataaatttatatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG
                                                                      | | ||    ||     || |     ||||   | ||  || |    | |||| | |   | ||   || |||||  ||    || ||    |||  |  ||  ||| |||||     | |||   |||||| || |||||||||| ||||||||||| ||||||||| | || || |||
----------------------------------------------------------------------gagctgcttgtgactggttctg----ttcatgctgattgctgttccta-tttagaatcaatttaaggtgttttcc--atgaattatag----aatacttgtttgtttccagATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88758132|gb|DY542273.1|DY542273
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|32845899|gb|CD985580.1|CD985580
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCACG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|76923556|gb|DV169545.1|DV169545
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|4827723|gb|AI668415.1|AI668415
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|50337822|gb|CO532948.1|CO532948
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|89251080|gb|DY622866.1|DY622866
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGG-CCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACT
EST: gi|37383724|gb|CF628889.1|CF628889
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|148938687|gb|EC883023.2|EC883023
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|71443106|gb|DR824156.1|DR824156
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAGGCTTTTATA
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATA
EST: gi|18181535|gb|BM382745.1|BM382745
EST:     TGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: TGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|89248722|gb|DY620508.1|DY620508
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|71420007|gb|DR804974.1|DR804974
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|211237149|gb|FL440871.1|FL440871
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: gi|89758224|gb|DY687488.1|DY687488
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCT
EST: gi|32913045|gb|CF017857.1|CF017857
EST:     GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG                         ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG
                tcctgat  putative branch site (score: 3)
                                           tttgcttt  putative PPT