1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgaaccagtattactttcccatcatctgcgttatgaattgtgatttcatattgcagttaatgcatttttttattcctcttttacgtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTGGACCCTGATAAGAAAGGGCAGTGGTGGTTGTCTGGGGATGTTCCATCTA
species | Zea mays |
transcript | GRMZM2G111138_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATACTCGAAATAAAAAAGTGGCTTCAAAAG CTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTGEST: gi|28909943|gb|CB331177.1|CB331177
genomic: ATACTCG-AATAAAAAAGTGGCTTCAAAAGgtttgaacca ... gtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTG
EST: CTAAAGAGGATCCTTCACACCATACTCGAATAAAAAAGTGGCTTCAAAAG CTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTGEST: gi|60345567|gb|DN212540.1|DN212540
genomic: CTAAAGAGGATCCTTCACACCATACTCGAATAAAAAAGTGGCTTCAAAAGgtttgaacca ... gtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTG
EST: AGAGGATCCTTCACACCATACTCGAATAAAAAAGTGGCTTCAAAAG CTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTG
genomic: AGAGGATCCTTCACACCATACTCGAATAAAAAAGTGGCTTCAAAAGgtttgaacca ... gtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTG
gtgatttcatattgcagttaatgcatttttttattcctcttttacgtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTGGACCCTGATAAGAAAGGGCAGTGGTGGTTGTCTGGGGATGTTCCATCTA
agttaat putative branch site (score: 55)
tttttttattcctctt putative PPT
ttaatgcattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaccagtattactttcccatcatctgcgttatgaattgtgatttcatattgcagttaatgcatttttttattcctcttttacgtactgacagCTTAAGGCAGAAGATGTCCTCTTGCGTGGGTTAACATGGAGCAGGCTTTTGGACCCTGATAAGAAAGGGCAGTGGTGGTTGTCTGGGGATGTTCCATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG