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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtgatttgtcaaagatcttgctgcgtccgtttggactgcgtgtgtgtagagactattattgtgtgtgagacactgagactgacctggcgaaagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGGCTGCGCATCCGTGACTCGTACACCACGGCGCTGAACGTTTGCCAGGCCT

Basic information

species Zea mays
transcript GRMZM2G110714_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110714_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 3'ss of exon 11
gtgatgtgatttgtcaaagatcttgctgcgtccgtttggactgcgtgtgtgtagagactattattgtgtgtgagacactgagactgac---ctggcgaaagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGGCTGCGCATCCGTGACTCGTACACCACGGCGCTGAACGTTTGCCAGGCCT
        || |   ||  |   |        | | |  |   |  ||    |   |||  | || | | | |   |      |  ||   |||      |   |||||| ||||| ||||| |||||||||||||| || || ||| ||| |||||| ||||| |||||||| || |||| ||| |||||||| |||||||| || |
--------atctccaaattagtgtctaaaaaacatatttatcactagtcccgaactactgatctttttttttaactatatctgcccactcactgctatgtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGACTGCGTATCCGTGATTCCTACATCACAGCGCTGAATGTTTGCCAAGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93015684|gb|EB641204.1|EB641204
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCTTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|71442267|gb|DR823317.1|DR823317
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|93015685|gb|EB641205.1|EB641205
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|58029927|gb|CX725354.1|CX725354
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|85151755|gb|DW587501.1|DW587501
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGG-CACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAG
EST: gi|60347123|gb|DN214096.1|DN214096
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|56382701|gb|CV985370.1|CV985370
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|26457670|gb|CA829253.1|CA829253
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
EST: gi|60353908|gb|DN220881.1|DN220881
EST:     GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAG                         GTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG
genomic: GGGCGCGTCTCAGAGCCAACTACGAAGAAACAAAGCAGCTTCTCCTGCAGgtgatgtgat ... aagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagagactattattgtgtgtgagacactgagactgacctggcgaaagttttcagGTCGCTGGGCACAAGGACCTTCTGGAGGGCGACCCGTACCTGAAGCAGAGGCTGCGCATCCGTGACTCGTACACCACGGCGCTGAACGTTTGCCAGGCCT
                               gactgac  putative branch site (score: 2)
                                                ttttc  putative PPT
      actattatt  TA-rich tract