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gtgaggctgaatcccttctgcagaattggaaaggtctatgggtttgtcactatcgtttgctcattttcttgtttttttagctaattcttttgatgctgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAGCGACTAGGCTCAGATCCCAAGAACTGCAGCAGCTCATCGCTGCATTGC
species | Zea mays |
transcript | GRMZM2G110406_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|60348806|gb|DN215779.1|DN215779
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|211351182|gb|FL066642.1|FL066642
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|7137547|gb|AW499148.1|AW499148
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAEST: gi|32846451|gb|CD986132.1|CD986132
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|67019118|gb|CO447867.1|CO447867
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|4804177|gb|AI666043.1|AI666043
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|32937129|gb|CF041948.1|CF041948
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAEST: gi|211351181|gb|FL066641.1|FL066641
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
EST: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAG GTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
genomic: CAAGGCTTCAGAGCTTGCAAAGGATACTCCAAGGAAGTGTGGCTGTGCAGgtgaggctga ... tgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCA
atcgtttgctcattttcttgtttttttagctaattcttttgatgctgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAGCGACTAGGCTCAGATCCCAAGAACTGCAGCAGCTCATCGCTGCATTGC
attttcttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctgaatcccttctgcagaattggaaaggtctatgggtttgtcactatcgtttgctcattttcttgtttttttagctaattcttttgatgctgccatgcagGTCAACAGTGGGGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCAGCGACTAGGCTCAGATCCCAAGAACTGCAGCAGCTCATCGCTGCATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA