1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagctcatagctacagctaattccagactggttaatgctagaatatagtccgtacttttttttgtgtaattctaatggctcctgttgcttcacgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATATTCTTGTTTCG
species | Zea mays |
transcript | GRMZM2G109843_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATG GCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATEST: gi|67012906|gb|CO441655.1|CO441655
genomic: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATGgttagctcat ... cgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGAT
EST: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATG GCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATEST: gi|211442907|gb|FL470068.1|FL470068
genomic: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATGgttagctcat ... cgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGAT
EST: TATTGGAACCAGACAGGAATGGATGCATCACTCTTGACAATATCAGAATG GCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATEST: gi|211425736|gb|FL365893.1|FL365893
genomic: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATGgttagctcat ... cgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGAT
EST: TATTGGAACCAGACAGGAATGGATGCATCACTCTTGACAATATCAGAATG GCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGAT
genomic: TATTGGAACCAGACAGGAATGGGTGCATCACTCTTGACAATATCAGAATGgttagctcat ... cgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGAT
gtccgtacttttttttgtgtaattctaatggctcctgttgcttcacgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATATTCTTGTTTCG
ttctaat putative branch site (score: 2)
ttttttttgtgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctcatagctacagctaattccagactggttaatgctagaatatagtccgtacttttttttgtgtaattctaatggctcctgttgcttcacgctgtttagGCCTTAACGAGAGAAGCTACTGATGCAATGAAGGAATCGCGAGTTCAAGATATTCTTGTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA