Sequence
atgc intronic sequence ATGC exonic sequencegcagacatttcttctttcgtttttcttccatattttgttctttcacgaggctccgattggcttactgccttgctctatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109651_T03 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA19G29580.1 (Glycine max), 3'ss of exon 4
--------------gcagacatttcttctttcgtttttctt-------------------ccatattttgttctttcacg---aggctccgattggctta-----ctgccttgctc---tatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
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gtttcttaacatgttctggcattttcttagttattttttttagtttggataaaaagaaagcattaatttgggatgtgaagtatgaactctttttattatgaagatttgcattgctaatgtgtaaaacagACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
upper sequence: GRMZM2G109651_T03 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA16G03970.1 (Glycine max), 3'ss of exon 9
--------------gcagacatttcttctttcgtttttcttccata-------------ttttgttctttcacg--------aggctccgattgg----cttactgccttgctctatgttg----cagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
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gtttcttaacatgttctggcattttcttagttatttttttagtttggacaaaaagaaagcattaatttgggacgtaaagtatgaactctttttattattcctattgtattgcta-atgttaaaaacagACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATT
upper sequence: GRMZM2G109651_T03 (Zea mays), 3'ss of exon 9
lower sequence: AT2G01280.1 (Arabidopsis thaliana), 3'ss of exon 8
gcagacatttcttctttcgtttttcttccatattttgttctttcacgaggctccgattggcttactgccttgctctatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
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-gtgtgatagttacctacatgttctttgtcttaagagttatatattatggcttgtgttaatgt-tggccatctattcgcttgcagACAGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATCATGTACTCTAGGGCAGACATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93284105|gb|EB676369.1|EB676369EST: AGAGAGATTGGATGCAG ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCA
genomic: AGAGAGATTGGATGCAGgcagacattt ... tatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttgttctttcacgaggctccgattggcttactgccttgctctatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
ggcttac putative branch site (score: 3)
ccttgctct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcagacatttcttctttcgtttttcttccatattttgttctttcacgaggctccgattggcttactgccttgctctatgttgcagACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT