1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttttccatataaattttgaagatgtgtgttagagtttataagtctagtgataaattcttaagtattgactactgctgttatcttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCATGCCTTCAGATAATGTTGCAAAAGATGACACTAATGGGTTGGCAGAGAT
species | Zea mays |
transcript | GRMZM2G109284_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAG GAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCAEST: gi|78104253|gb|DV522671.1|DV522671
genomic: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAGgtttttccat ... cttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCA
EST: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAG GAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCAEST: gi|5928805|gb|AW056097.1|AW056097
genomic: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAGgtttttccat ... cttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCA
EST: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAG GAACACACAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCA
genomic: TGTTATCACAGAGATGGAGGAATTTGTGTGGGGACTGCAATTGAATCAAGgtttttccat ... cttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCA
tataagtctagtgataaattcttaagtattgactactgctgttatcttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCATGCCTTCAGATAATGTTGCAAAAGATGACACTAATGGGTTGGCAGAGAT
tattgac putative branch site (score: 608)
ttatctttt putative PPT
ataaattcttaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttccatataaattttgaagatgtgtgttagagtttataagtctagtgataaattcttaagtattgactactgctgttatcttttaacagGAACACGCAAGCCAGAAGACGATGTGTTTATGGATGAAGATGATGATGCCATGCCTTCAGATAATGTTGCAAAAGATGACACTAATGGGTTGGCAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG